Protein Servers
Protein Servers
EMBL Secondary Structure prediction servers
PREDATOR documentation
Another secondary structure prediction program at EMBL, but not in the above list. Claims 75% accuracy.
A guide to Structure Prediction
An extremely useful overview of secondary structure prediction, with links, by Robert Russell of ICRF. Well worth a look!
SCOP: Structural Classification of Proteins
A link from the Cambridge page to a server giving heirarchical structural classification of proteins by a number of routes including keyword and homology search.
The Biomolecular Structure and Modelling Group at UCL
With links to...
Enzyme Structures Database
A database of known enzymes structures.
CATH
Protein classification system, based on differnt rules to SCOP (above)
The UCLBSM database browser
A database browser at University College London for protein sequence and structure data, including OWL, PRINTS (a database of protein finger prints) and a database of protein alignments. You can even call up colour-coded protein alignments.
Bioinformatics
Practical at UCL
A web tutorial in bioinformatics (needs several Netscape windows open
at once)
Birkbeck Crsytallography
Department
Home of Professor Tom Blundell's Crystallography group's Web server,
and the famous course on the principles of protein structure prediction
(as seen in the national press). Registration now costs. Recent!
The group now supports a Mirror to the PDB data library of 3D Atomic coordinates
here, registration
is required.
Or you could try the original Protein
Data Bank or even better, Molecules-R-US
at NCBI (I don't make these names up).
If you know the name of your PDB entry, EBI's
PDB database entry retriever
will get it for you fast!
Macromolecular Structure Query
Several ways to query PDB.
The BMERC PSA server
The BioMolecular Engineering Research Center Protein Sequence Analysis
server. This WWW front-end to an e-mail server takes a protein sequence,
calculates some secondary structure predictions and returns four e-mails
(three postscript files and one explanation page) to you.
Protein Localisation
server in Japan
Server that takes a protein sequence and predicts its cellular location,
using established rules. Spotted by Andy Law, Roslin.
Prodom Homepage
Home of the PROtein DOMain database, with search engines.
The BLOCKS server
The homepage for the protein BLOCKS database (also accessible via
MSU)
Institute of Biology and Chemistry of
Proteins, France.
Home of AnTheProt (Analyse the proteins) for PCs and an e-mail based
secondary structure prediction server
NNPREDICT
secondary structure prediction server.
The program gives you a prediction per residue (helix, strand or no
prediction) and no justification. That's chutzpah!
Biocomputing and Modelling,
Zurich
Links to some nice protein modelling stuff.
The Quest Protein Database Center
A site dedicated to the creation of protein databases, with lots of
nice 2D goodies.
Protein Science - the electronic edition